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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
27
DNA accessibility
4
3D chromatin structure
DNA binding
2
Transcription
Date released
24
June, 2019
4
July, 2019
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
367
bam
366
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
34
Homo sapiens
Biosample type
177
tissue
34
primary cell
6
in vitro differentiated cells
3
cell line
Organ
18
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
Project
34
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
32
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
34 results
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DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
astrocyte of the hippocampus
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
hepatocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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