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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
28
ChIP-seq
1
snATAC-seq
Assay category
28
DNA binding
1
DNA accessibility
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
26
August, 2017
2
September, 2017
1
May, 2022
Available data
1730
bam
1555
bigWig
1076
tsv
767
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
29
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
10
primary cell
3
stem cell
2
cell line
Organ
21
pancreas
4
adipose tissue
4
connective tissue
3
liver
1
musculature of body
Project
29
AMP
Genome assembly (visualization)
29
hg19
28
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
14
missing controlled_by
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
snATAC-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
skeletal muscle tissue
1
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