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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
27
DNase-seq
12
ATAC-seq
6
WGBS
4
Hi-C
3
ChIP-seq
2
small RNA-seq
1
pCHi-C
Assay category
254
Transcription
39
DNA accessibility
6
DNA methylation
4
3D chromatin structure
3
DNA binding
Target of assay
3
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
54
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
24
June, 2019
22
July, 2019
12
February, 2023
8
February, 2021
5
December, 2019
5
November, 2020
4
October, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
307
Homo sapiens
Biosample type
1281
tissue
307
primary cell
156
in vitro differentiated cells
122
cell line
7
stem cell
Organ
137
epithelium
108
pancreas
23
connective tissue
16
kidney
11
brain
11
liver
10
vasculature
8
blood vessel
7
heart
3
musculature of body
2
adipose tissue
2
artery
2
vein
1
eye
1
pericardium
Project
205
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
282
GRCh38
282
hg19
Lab
203
AMP-T2D consortium
98
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
BIOSAMPLE
ASSAY
307 results
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total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
ChIP-seq
small RNA-seq
pCHi-C
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
hepatocyte
5
1
3
pancreatic polypeptide-secreting cell
9
osteoblast
5
1
1
pancreatic cell
7
mesenchymal cell
6
CD8-positive, alpha-beta T cell
4
pancreatic stellate cell
4
cardiac fibroblast
3
gabaergic neuron
3
glutamatergic neuron
3
kidney tubule cell
1
2
microglial cell/astrocyte
3
oligodendrocyte
3
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
central memory CD8-positive, alpha-beta T cell
2
cerebellar granule cell
2
co-expressing pancreatic endocrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell
2
endothelial cell of umbilical vein
2
enteroendocrine cell
2
epithelial cell of proximal tubule
1
1
gamma-delta T cell
2
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
1
mast cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell of adipose
1
1
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreatic epsilon cell
2
regulatory T cell
2
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
cardiac atrium fibroblast
1
cardiac muscle cell
1
cardiac ventricle fibroblast
1
choroid plexus epithelial cell
1
embryonic stem cell
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
immature natural killer cell
1
kidney capillary endothelial cell
1
mesangial cell
1
myeloid dendritic cell
1
natural killer cell
1
pericardium fibroblast
1
plasma cell
1
plasmacytoid dendritic cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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