Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
2
Capture-C
2
total RNA-seq
1
pCHi-C
Assay category
5
3D chromatin structure
DNA accessibility
2
Transcription
Date released
4
July, 2019
2
August, 2021
2
May, 2021
1
February, 2021
1
October, 2019
Available data
bam
2779
bigWig
1586
tsv
1285
bed narrowPeak
1256
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
6
primary cell
2
cell line
2
in vitro differentiated cells
Organ
3
brain
3
connective tissue
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
pancreas
Project
10
AMP
Genome assembly (visualization)
10
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bam
BIOSAMPLE
ASSAY
10 results
search-icon
table-tab-icon
Clear Filters
Hi-C
Capture-C
total RNA-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
Download