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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
6
DNA accessibility
6
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
3
August, 2017
3
August, 2021
3
November, 2018
2
February, 2021
2
June, 2019
1
July, 2019
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
14
Homo sapiens
Biosample type
6
primary cell
6
tissue
2
cell line
Organ
78
kidney
36
brain
36
limb
34
musculature of body
33
connective tissue
30
heart
29
pancreas
21
epithelium
18
ureter
14
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
bone element
4
eye
4
skeleton
3
embryo
2
nerve
2
vein
1
spleen
Project
14
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_slims!
Transcription
BIOSAMPLE
ASSAY
14 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
primary cell
hepatocyte
3
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
tissue
liver
3
2
right lobe of liver
1
cell line
HepG2
1
1
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