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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
snATAC-seq
Assay category
53
DNA binding
5
DNA accessibility
Transcription
1
3D chromatin structure
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
5
August, 2021
4
February, 2023
July, 2019
2
February, 2021
2
September, 2017
1
May, 2022
1
October, 2019
Available data
1969
bam
1810
bed narrowPeak
1747
bigWig
1040
bigBed narrowPeak
987
fastq
398
tagAlign
bed broadPeak
285
bigBed broadPeak
267
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
56
tsv
23
bedpe bed3+
23
hic
13
bed bedMethyl
13
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
4
tar
3
cool
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
63
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
4
primary cell
3
stem cell
2
cell line
Organ
22
pancreas
18
connective tissue
7
liver
4
adipose tissue
3
embryo
3
epithelium
1
musculature of body
Project
63
AMP
Genome assembly (visualization)
63
hg19
54
GRCh38
Lab
61
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
July, 2019
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
Hi-C
snATAC-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
primary cell
hepatocyte
3
osteoblast
1
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
See all biosamples
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