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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
DNase-seq
11
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
30
DNA accessibility
11
DNA binding
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
24
June, 2019
11
August, 2017
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
137
bam
114
bigWig
98
fastq
93
bed narrowPeak
46
bigBed narrowPeak
45
bed bed3+
28
bed broadPeak
27
bigBed broadPeak
22
tagAlign
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
1
bedpe bed3+
1
hdf5
Organism
45
Homo sapiens
Biosample type
24
tissue
13
in vitro differentiated cells
8
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
45
AMP
Genome assembly (visualization)
44
hg19
37
GRCh38
Lab
43
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
45 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
white adipose tissue
4
omental fat pad
2
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
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