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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
4
ATAC-seq
1
snATAC-seq
Assay category
193
DNA accessibility
50
DNA binding
3
3D chromatin structure
2
Transcription
Date released
173
June, 2019
9
November, 2018
5
October, 2019
4
February, 2023
1
May, 2022
1
November, 2020
Available data
438
bed narrowPeak
347
bam
298
bigWig
201
bigBed narrowPeak
193
bed bed3+
192
bed broadPeak
190
bigBed broadPeak
70
fastq
64
xls
21
zippedFastqFolder
13
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
193
Homo sapiens
Biosample type
177
tissue
11
primary cell
4
in vitro differentiated cells
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
32
brain
30
heart
18
ureter
epithelium
12
connective tissue
11
vasculature
9
blood vessel
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
193
AMP
Genome assembly (visualization)
188
GRCh38
176
hg19
Lab
193
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
BIOSAMPLE
ASSAY
193 results
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DNase-seq
ATAC-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
cardiac muscle cell
1
+ See 4 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
Panc1
1
See all biosamples
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