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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
209
DNA accessibility
39
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
21
histone
21
histone modification
11
broad histone mark
10
narrow histone mark
9
control
9
transcription factor
1
RNA binding protein
Date released
19
August, 2017
15
December, 2017
3
August, 2021
2
September, 2017
Available data
1490
bam
1304
bigWig
1277
bed narrowPeak
786
bigBed narrowPeak
768
fastq
394
tagAlign
112
bed broadPeak
79
bigBed broadPeak
39
bed bed3+
3
tar
1
tagAlign bed3+
Organism
39
Homo sapiens
Biosample type
19
in vitro differentiated cells
14
tissue
3
primary cell
3
stem cell
Organ
11
pancreas
7
connective tissue
6
liver
3
embryo
3
epithelium
Project
39
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
39
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
10
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
tissue
islet of Langerhans
11
liver
3
primary cell
hepatocyte
3
stem cell
hESC
3
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