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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
Assay category
209
DNA accessibility
44
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
control
2
RNA binding protein
Date released
31
August, 2017
10
December, 2017
3
August, 2021
Available data
1330
bigWig
1285
bed narrowPeak
1275
bam
801
bigBed narrowPeak
689
fastq
330
tagAlign
114
bed broadPeak
79
bigBed broadPeak
44
bed bed3+
3
tar
1
tagAlign bed3+
Organism
44
Homo sapiens
Biosample type
25
tissue
14
in vitro differentiated cells
3
primary cell
2
stem cell
Organ
19
pancreas
10
connective tissue
5
liver
4
adipose tissue
3
epithelium
2
embryo
Project
44
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
44
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
control
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
tissue
islet of Langerhans
19
white adipose tissue
4
liver
2
in vitro differentiated cells
adipocyte
6
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
primary cell
hepatocyte
3
stem cell
hESC
2
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