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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
5
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
Assay category
DNA accessibility
5
3D chromatin structure
2
Transcription
Date released
4
July, 2019
2
August, 2021
2
February, 2021
2
May, 2021
1
October, 2019
Available data
1586
tsv
1429
bigWig
1425
bam
399
fastq
157
txt
93
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
11
bed bed3+
8
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
vcf
Organism
11
Homo sapiens
Biosample type
7
primary cell
2
cell line
2
in vitro differentiated cells
Organ
4
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
pancreas
Project
11
AMP
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
11 results
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Hi-C
Capture-C
pCHi-C
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
1
Panc1
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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