Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
total RNA-seq
1
snATAC-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
Date released
4
February, 2023
4
July, 2019
2
August, 2021
2
February, 2021
1
May, 2022
Available data
427
bam
309
fastq
237
bigWig
185
bed narrowPeak
161
tsv
153
zippedFastqFolder
152
tagAlign
102
txt
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
13
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
13
Homo sapiens
Biosample type
6
in vitro differentiated cells
5
primary cell
1
cell line
1
tissue
Organ
8
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
GRCh38
248
hg19
Lab
11
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
files.file_type!
bed bedMethyl
assembly!
GRCh38
BIOSAMPLE
ASSAY
13 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
osteoblast
1
cell line
HepG2
1
tissue
skeletal muscle tissue
1
Download