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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
53
ChIP-seq
5
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
5
3D chromatin structure
4
DNA accessibility
Date released
4
February, 2023
4
July, 2019
1
October, 2019
Available data
278
bed narrowPeak
175
bam
141
bigWig
64
xls
62
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
23
hic
20
bedpe bed3+
14
tsv
12
bed bed3
9
bed bed3+
7
bed bedgraph
5
hdf5
3
cool
3
txt
2
bed broadPeak
1
bedpe
Organism
9
Homo sapiens
Biosample type
4
in vitro differentiated cells
4
primary cell
1
cell line
Organ
5
connective tissue
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
liver
1
pancreas
Project
9
AMP
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
9 results
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Hi-C
ATAC-seq
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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