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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
DNase-seq
34
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
182
DNA accessibility
34
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
164
June, 2019
26
August, 2017
9
November, 2018
8
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
2762
bigWig
2734
bam
1467
bed narrowPeak
1275
tsv
946
bigBed narrowPeak
890
fastq
297
bed broadPeak
261
bigBed broadPeak
225
bed bed3+
221
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
18
hic
15
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
txt
Organism
225
Homo sapiens
Biosample type
189
tissue
30
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
71
kidney
36
limb
34
musculature of body
27
heart
27
pancreas
25
brain
18
ureter
15
epithelium
13
connective tissue
13
liver
12
vasculature
10
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
225
AMP
Genome assembly (visualization)
239
GRCh38
225
hg19
Lab
223
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
225 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
muscle of arm
17
heart
16
brain
14
kidney
13
+ See 31 more…
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 15 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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