Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
7
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
11
DNA accessibility
11
DNA binding
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
11
August, 2017
5
June, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
567
bigWig
563
bam
474
tsv
74
bed narrowPeak
73
fastq
27
bigBed narrowPeak
26
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tagAlign
Organism
26
Homo sapiens
Biosample type
13
in vitro differentiated cells
7
primary cell
6
tissue
Organ
71
kidney
36
limb
34
musculature of body
27
heart
27
pancreas
26
connective tissue
25
brain
18
ureter
15
epithelium
13
liver
12
vasculature
10
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
26
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
24
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
26 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
brain pericyte
1
1
cardiac fibroblast
2
osteoblast
1
1
hepatic stellate cell
1
tissue
white adipose tissue
4
omental fat pad
2
Download