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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
17
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
17
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
14
August, 2017
9
November, 2018
8
October, 2019
4
July, 2019
2
February, 2021
2
May, 2021
2
September, 2017
1
December, 2017
1
May, 2022
1
November, 2020
Available data
2396
bam
2120
bigWig
1469
tsv
1053
fastq
913
bed narrowPeak
646
bigBed narrowPeak
256
bed broadPeak
254
bigBed broadPeak
231
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
63
tagAlign
36
bed bedMethyl
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
231
Homo sapiens
Biosample type
193
tissue
34
primary cell
in vitro differentiated cells
3
cell line
1
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
18
epithelium
18
ureter
17
pancreas
14
connective tissue
13
vasculature
11
blood vessel
10
liver
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
231
AMP
Genome assembly (visualization)
222
GRCh38
208
hg19
Lab
229
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed bedMethyl
target.investigated_as!
histone
BIOSAMPLE
ASSAY
231 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
1
See all biosamples
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