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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
34
ChIP-seq
7
ATAC-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
212
DNA accessibility
34
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
26
August, 2017
9
November, 2018
8
October, 2019
5
February, 2023
4
February, 2021
4
July, 2019
3
August, 2021
3
December, 2017
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
255
Homo sapiens
Biosample type
210
tissue
38
primary cell
in vitro differentiated cells
4
cell line
3
stem cell
Organ
78
kidney
36
brain
36
limb
34
musculature of body
30
heart
29
pancreas
21
epithelium
18
ureter
15
connective tissue
14
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
bone element
4
eye
4
skeleton
2
nerve
2
vein
1
spleen
Project
255
AMP
Genome assembly (visualization)
241
GRCh38
232
hg19
Lab
253
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
1
inconsistent replicate
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
255 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
1
kidney
13
+ See 46 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
osteoblast
1
1
1
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
+ See 19 more…
cell line
HepG2
1
1
Panc1
1
1
stem cell
hESC
3
See all biosamples
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