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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
740
ChIP-seq
230
total RNA-seq
206
DNase-seq
128
single cell RNA-seq
61
ATAC-seq
28
snATAC-seq
17
WGBS
6
Hi-C
4
RRBS
2
FAIRE-seq
2
pCHi-C
1
GRO-seq
Assay category
740
DNA binding
358
Transcription
297
DNA accessibility
21
DNA methylation
6
3D chromatin structure
Target of assay
421
transcription factor
168
histone modification
167
histone
146
control
88
broad histone mark
83
RNA binding protein
82
recombinant protein
79
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
324
November, 2017
233
August, 2017
187
June, 2019
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
51
December, 2017
50
July, 2018
47
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
30
January, 2019
25
May, 2022
17
October, 2017
11
September, 2017
8
October, 2019
7
August, 2020
4
July, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
May, 2021
1
January, 2018
1
March, 2019
1
November, 2020
Available data
3101
bam
2870
bigWig
1645
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1418
Homo sapiens
Biosample type
545
tissue
446
primary cell
430
cell line
in vitro differentiated cells
4
stem cell
Organ
477
pancreas
457
liver
259
epithelium
78
kidney
60
blood
60
bodily fluid
55
connective tissue
54
brain
44
adipose tissue
36
limb
36
musculature of body
30
heart
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
2
nerve
2
vein
Project
1256
AMP
169
HPAP
Genome assembly (visualization)
1075
hg19
1032
GRCh38
1
hg18
Lab
1228
AMP-T2D consortium
169
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
audit script error
28
inconsistent control
11
inconsistent ontology term
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1425 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
pCHi-C
GRO-seq
tissue
islet of Langerhans
28
103
1
20
1
liver
67
2
1
1
body of pancreas
33
4
4
2
spleen
20
1
1
2
brain
9
14
+ See 44 more…
primary cell
pancreatic alpha cell
13
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
13
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 39 more…
cell line
HepG2
360
5
1
1
1
GM12878
60
Panc1
1
1
stem cell
hESC
3
1
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