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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
30
ChIP-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
197
DNA accessibility
30
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
9
narrow histone mark
9
transcription factor
8
broad histone mark
4
control
2
RNA binding protein
Date released
181
June, 2019
22
August, 2017
8
November, 2018
8
October, 2019
3
August, 2021
3
December, 2017
3
July, 2019
2
May, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2567
bam
2357
bigWig
1615
bed narrowPeak
1171
fastq
1000
bigBed narrowPeak
996
tsv
350
tagAlign
312
bed broadPeak
276
bigBed broadPeak
234
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
234
Homo sapiens
Biosample type
199
tissue
29
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
21
epithelium
18
ureter
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
234
AMP
Genome assembly (visualization)
227
GRCh38
212
hg19
Lab
232
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
234 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 40 more…
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
+ See 15 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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