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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
2
August, 2021
2
September, 2017
1
February, 2021
1
October, 2019
Available data
2508
bam
2274
bigWig
1328
tsv
1059
bed narrowPeak
907
fastq
744
bigBed narrowPeak
298
tagAlign
157
txt
93
bed broadPeak
58
bigBed broadPeak
54
bed bed3+
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
54
Homo sapiens
Biosample type
28
tissue
21
in vitro differentiated cells
primary cell
3
stem cell
2
cell line
Organ
22
pancreas
13
connective tissue
4
adipose tissue
4
liver
3
embryo
Project
54
AMP
Genome assembly (visualization)
54
hg19
51
GRCh38
Lab
52
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
Capture-C
Hi-C
pCHi-C
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 1 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
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