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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
108
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
183
DNA accessibility
108
DNA binding
1
3D chromatin structure
Target of assay
63
transcription factor
36
histone
36
histone modification
19
broad histone mark
17
narrow histone mark
9
control
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
58
November, 2017
34
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2783
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
295
Homo sapiens
Biosample type
205
tissue
61
cell line
primary cell
26
in vitro differentiated cells
3
stem cell
Organ
68
kidney
65
liver
36
limb
33
musculature of body
29
pancreas
27
brain
27
heart
20
connective tissue
18
ureter
6
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
295
AMP
Genome assembly (visualization)
279
hg19
273
GRCh38
Lab
293
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
295 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
cell line
HepG2
58
1
Panc1
1
1
in vitro differentiated cells
adipocyte
1
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
stem cell
hESC
3
See all biosamples
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