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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
5
total RNA-seq
2
Hi-C
1
DNase-seq
1
WGBS
1
pCHi-C
Assay category
420
DNA binding
5
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
23
January, 2019
2
October, 2019
1
February, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
430
Homo sapiens
Biosample type
545
tissue
446
primary cell
430
cell line
147
in vitro differentiated cells
4
stem cell
Organ
368
liver
60
blood
60
bodily fluid
2
pancreas
Project
430
AMP
Genome assembly (visualization)
370
hg19
323
GRCh38
Lab
430
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
430 results
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ChIP-seq
total RNA-seq
Hi-C
DNase-seq
WGBS
pCHi-C
cell line
HepG2
360
5
1
1
1
GM12878
60
Panc1
1
1
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