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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
24
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
21
June, 2019
4
July, 2019
3
August, 2021
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
603
bigWig
597
bam
409
fastq
289
bed narrowPeak
266
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
34
Homo sapiens
Biosample type
178
tissue
34
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
21
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
6
liver
heart
2
vein
1
eye
1
musculature of body
Project
34
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
32
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
34 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
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