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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
3
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
25
DNA accessibility
3
3D chromatin structure
2
Transcription
Date released
22
June, 2019
3
July, 2019
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
602
bigWig
597
bam
409
fastq
289
bed narrowPeak
265
tsv
153
zippedFastqFolder
107
bigBed narrowPeak
96
tagAlign
47
bed broadPeak
47
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
31
Homo sapiens
Biosample type
199
tissue
31
primary cell
25
in vitro differentiated cells
3
stem cell
2
cell line
Organ
21
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
31
AMP
Genome assembly (visualization)
25
GRCh38
24
hg19
Lab
29
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
31 results
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DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
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