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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
25
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
24
June, 2019
4
July, 2019
3
August, 2021
2
May, 2021
1
February, 2021
1
November, 2020
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
35
Homo sapiens
Biosample type
205
tissue
35
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
21
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
6
blood vessel
6
liver
3
heart
vein
1
eye
1
musculature of body
Project
35
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
33
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
vein
BIOSAMPLE
ASSAY
35 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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