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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 176DNase-seq
  • 28ChIP-seq
  • 1snATAC-seq
Assay category
  • 177DNA accessibility
  • 28DNA binding
Target of assay
  • 13transcription factor
  • 12histone
  • 12histone modification
  • 6broad histone mark
  • 6narrow histone mark
  • 3control
  • 2RNA binding protein
Date released
  • 163June, 2019
  • 26August, 2017
  • 9November, 2018
  • 4October, 2019
  • 2September, 2017
  • 1May, 2022
Available data
  • 1907bam
  • 1772bigWig
  • 1076tsv
  • 984bed narrowPeak
  • 561bigBed narrowPeak
  • 377fastq
  • 238tagAlign
  • 213bed broadPeak
  • 205bed bed3+
  • 176bigBed broadPeak
  • 157txt
  • 64xls
  • 25bed bedMethyl
  • 25bigBed bedMethyl
  • 11hic
  • 10bedpe bed3+
  • 6csv
  • 5bed bed3
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 205Homo sapiens
Biosample type
  • 205tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 68kidney
  • 36limb
  • 33musculature of body
  • 27brain
  • 27heart
  • 27pancreas
  • 18ureter
  • 6adipose tissue
  • 6connective tissue
  • 6liver
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 3eye
  • 2nerve
  • 1spleen
Project
  • 205AMP
Genome assembly (visualization)
  • 204GRCh38
  • 189hg19
Lab
  • 205AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
Audit category:
  • 14missing controlled_by
BIOSAMPLE
ASSAY

205 results

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Clear Filters
DNase-seq
ChIP-seq
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
liver23
body of pancreas4
left renal cortex interstitium4
left renal pelvis4
right renal pelvis4
white adipose tissue4
heart left ventricle3
retina3
right renal cortex interstitium3
coronary artery2
frontal cortex2
omental fat pad2
pancreas2
right atrium auricular region2
tibial artery2
tibial nerve2
Ammon's horn1
ascending aorta1
caudate nucleus1
cerebellar cortex1
cerebellum (Hemisphere)1
forelimb muscle1
globus pallidus1
heart right ventricle1
hindlimb muscle1
inferior parietal cortex1
left cardiac atrium1
medulla oblongata1
midbrain1
middle frontal gyrus1
occipital lobe1
pons1
putamen1
right lobe of liver1
skeletal muscle tissue1
spleen1
superior temporal gyrus1
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