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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
8
single cell RNA-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
9
DNA binding
8
Transcription
5
DNA accessibility
Target of assay
9
control
Date released
8
February, 2021
5
December, 2017
4
February, 2023
2
August, 2017
2
August, 2021
2
September, 2017
1
May, 2022
1
November, 2018
1
September, 2018
Available data
3392
bam
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
26
Homo sapiens
Biosample type
11
in vitro differentiated cells
10
tissue
3
primary cell
1
cell line
1
stem cell
Organ
8
connective tissue
5
kidney
3
liver
2
pancreas
1
embryo
1
musculature of body
Project
26
AMP
Genome assembly (visualization)
18
hg19
9
GRCh38
Lab
24
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
2
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
tissue
kidney
5
islet of Langerhans
2
liver
1
1
skeletal muscle tissue
1
primary cell
pancreatic cell
2
osteoblast
1
cell line
HepG2
1
stem cell
hESC
1
See all biosamples
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