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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
2
Capture-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
2
Transcription
Date released
4
February, 2023
2
August, 2021
2
May, 2021
1
February, 2021
1
May, 2022
Available data
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
6
in vitro differentiated cells
2
primary cell
1
cell line
1
tissue
Organ
6
connective tissue
1
liver
1
musculature of body
Project
10
AMP
Genome assembly (visualization)
10
hg19
Lab
6
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
hdf5
bam
BIOSAMPLE
ASSAY
10 results
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Clear Filters
ATAC-seq
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
CD8-positive, alpha-beta T cell
2
cell line
HepG2
1
tissue
skeletal muscle tissue
1
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