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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
13
ChIP-seq
4
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
198
DNA accessibility
13
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
6
transcription factor
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
control
Date released
183
June, 2019
7
August, 2017
7
November, 2018
6
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
1
May, 2022
1
November, 2020
Available data
2415
bam
2289
bigWig
1473
bed narrowPeak
tsv
934
bigBed narrowPeak
746
fastq
342
tagAlign
300
bed broadPeak
277
bigBed broadPeak
219
bed bed3+
152
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
12
hic
9
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
4
tar
1
tagAlign bed3+
1
vcf
Organism
219
Homo sapiens
Biosample type
178
tissue
37
primary cell
in vitro differentiated cells
3
stem cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
pancreas
21
epithelium
18
ureter
14
connective tissue
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
219
AMP
Genome assembly (visualization)
210
GRCh38
198
hg19
Lab
217
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
tsv
organ_slims!
pancreas
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
219 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
stem cell
hESC
3
cell line
HepG2
1
See all biosamples
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