Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
DNase-seq
143
ChIP-seq
6
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
185
DNA accessibility
143
DNA binding
1
3D chromatin structure
Target of assay
71
histone
71
histone modification
63
transcription factor
39
broad histone mark
32
narrow histone mark
9
control
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
163
June, 2019
64
November, 2017
60
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
4
February, 2023
4
October, 2017
2
August, 2021
2
September, 2017
1
February, 2021
1
March, 2019
1
May, 2022
Available data
2783
bam
2516
bigWig
1482
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
326
Homo sapiens
Biosample type
242
tissue
61
cell line
primary cell
26
in vitro differentiated cells
3
stem cell
Organ
68
kidney
65
liver
46
musculature of body
43
pancreas
36
brain
36
limb
27
heart
21
connective tissue
18
ureter
7
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
332
AMP
Genome assembly (visualization)
315
hg19
288
GRCh38
Lab
328
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
16
missing controlled_by
Audit category:
23
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
332 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
27
2
heart
18
brain
14
3
muscle of arm
17
skeletal muscle tissue
13
1
+ See 46 more…
cell line
HepG2
58
1
Panc1
1
1
in vitro differentiated cells
adipocyte
1
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
stem cell
hESC
3
See all biosamples
Download