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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
143
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
182
DNA accessibility
143
DNA binding
1
3D chromatin structure
Target of assay
71
histone
71
histone modification
63
transcription factor
39
broad histone mark
32
narrow histone mark
9
control
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
64
November, 2017
60
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
4
October, 2017
2
August, 2021
2
February, 2023
2
September, 2017
1
February, 2021
1
March, 2019
1
May, 2022
Available data
2616
bam
2402
bigWig
1484
bed narrowPeak
1197
tsv
945
fastq
932
bigBed narrowPeak
295
tagAlign
272
bed broadPeak
235
bigBed broadPeak
233
bed bed3+
76
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
12
bedpe bed3+
12
hic
11
bed bed3
6
bed bedgraph
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
323
Homo sapiens
Biosample type
241
tissue
61
cell line
primary cell
24
in vitro differentiated cells
3
stem cell
Organ
68
kidney
65
liver
45
musculature of body
43
pancreas
36
brain
35
limb
27
heart
19
connective tissue
18
ureter
7
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
329
AMP
Genome assembly (visualization)
312
hg19
287
GRCh38
Lab
325
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
16
missing controlled_by
Audit category:
23
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
329 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
27
2
heart
18
brain
14
3
muscle of arm
17
skeletal muscle tissue
13
1
+ See 46 more…
cell line
HepG2
58
1
Panc1
1
1
in vitro differentiated cells
adipocyte
1
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 2 more…
stem cell
hESC
3
See all biosamples
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