Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
DNase-seq
124
ChIP-seq
2
ATAC-seq
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
180
DNA accessibility
124
DNA binding
1
3D chromatin structure
Target of assay
63
histone
63
histone modification
57
transcription factor
35
broad histone mark
28
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
4
control
1
other context
1
other post-translational modification
Date released
163
June, 2019
64
November, 2017
52
August, 2017
9
November, 2018
6
October, 2019
4
October, 2017
3
December, 2017
2
September, 2017
1
February, 2021
1
March, 2019
1
May, 2022
Available data
2492
bam
2297
bigWig
1390
bed narrowPeak
1199
tsv
916
bigBed narrowPeak
808
fastq
272
bed broadPeak
258
tagAlign
235
bigBed broadPeak
211
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
13
hic
12
bedpe bed3+
6
bed bed3
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
300
Homo sapiens
Biosample type
242
tissue
61
cell line
primary cell
in vitro differentiated cells
3
stem cell
Organ
68
kidney
65
liver
46
musculature of body
43
pancreas
36
brain
36
limb
27
heart
18
ureter
7
adipose tissue
7
connective tissue
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
306
AMP
Genome assembly (visualization)
289
hg19
268
GRCh38
Lab
304
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
15
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
in vitro differentiated cells
BIOSAMPLE
ASSAY
306 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
27
2
heart
18
brain
14
3
muscle of arm
17
skeletal muscle tissue
13
1
+ See 46 more…
cell line
HepG2
58
1
Panc1
1
1
stem cell
hESC
3
See all biosamples
Download