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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
6
DNA binding
1
3D chromatin structure
Target of assay
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
1
February, 2021
1
October, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
8
Homo sapiens
Biosample type
52
tissue
25
in vitro differentiated cells
12
primary cell
8
cell line
3
stem cell
Organ
7
liver
1
pancreas
Project
8
AMP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
Hi-C
pCHi-C
cell line
HepG2
6
1
Panc1
1
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