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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
ChIP-seq
23
ATAC-seq
5
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
414
DNA binding
28
DNA accessibility
1
3D chromatin structure
Target of assay
329
transcription factor
81
histone modification
81
recombinant protein
80
histone
56
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
19
August, 2017
17
August, 2021
6
October, 2019
2
February, 2021
2
June, 2019
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
444
Homo sapiens
Biosample type
309
cell line
114
tissue
14
in vitro differentiated cells
7
primary cell
Organ
444
liver
226
pancreas
206
brain
183
kidney
153
epithelium
151
heart
135
vasculature
131
blood vessel
92
limb
88
connective tissue
74
artery
61
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
17
adipose tissue
15
embryo
14
spleen
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
444
AMP
Genome assembly (visualization)
440
hg19
368
GRCh38
Lab
410
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
444 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
307
1
1
tissue
liver
83
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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