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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
DNase-seq
65
ATAC-seq
28
snATAC-seq
2
FAIRE-seq
Assay category
860
DNA binding
373
Transcription
302
DNA accessibility
21
DNA methylation
6
3D chromatin structure
Date released
187
June, 2019
27
February, 2021
19
May, 2022
14
September, 2018
10
November, 2018
9
August, 2017
8
October, 2017
7
August, 2020
7
October, 2019
5
September, 2017
4
February, 2023
3
September, 2020
1
March, 2019
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
302
Homo sapiens
Biosample type
209
tissue
87
primary cell
5
in vitro differentiated cells
1
cell line
Organ
78
kidney
66
pancreas
48
epithelium
36
limb
34
musculature of body
33
brain
30
heart
18
ureter
15
connective tissue
11
vasculature
9
blood vessel
6
liver
4
adipose tissue
4
artery
4
eye
2
nerve
2
spleen
2
vein
Project
265
AMP
37
HPAP
Genome assembly (visualization)
248
GRCh38
240
hg19
Lab
245
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
audit script error
6
inconsistent ontology term
BIOSAMPLE
ASSAY
302 results
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Clear Filters
DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
1
20
1
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 42 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 23 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
preadipocyte
1
cell line
Panc1
1
See all biosamples
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