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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
total RNA-seq
84
ChIP-seq
34
single cell RNA-seq
30
ATAC-seq
27
snATAC-seq
6
WGBS
2
Capture-C
Assay category
230
Transcription
84
DNA binding
57
DNA accessibility
6
DNA methylation
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
137
May, 2021
76
February, 2023
45
February, 2021
45
May, 2020
41
September, 2020
24
May, 2022
7
August, 2020
2
August, 2021
1
March, 2019
1
October, 2017
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
379
Homo sapiens
Biosample type
351
primary cell
26
tissue
2
in vitro differentiated cells
Organ
95
pancreas
69
epithelium
2
connective tissue
Project
180
T1D
169
HPAP
30
AMP
Genome assembly (visualization)
203
hg19
191
GRCh38
Lab
AMP-T2D consortium
206
Kyle Gaulton, UCSD
169
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
4
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
379 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Capture-C
primary cell
monocyte
53
84
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
exocrine cell
39
pancreatic beta cell
11
3
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tissue
islet of Langerhans
6
20
in vitro differentiated cells
adipocyte
1
osteoblast
1
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