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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
DNase-seq
3
ChIP-seq
2
Hi-C
1
snATAC-seq
Assay category
50
DNA accessibility
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
47
June, 2019
3
August, 2021
2
July, 2019
2
October, 2019
1
May, 2022
Available data
374
bam
369
bigWig
259
fastq
211
bed narrowPeak
165
tsv
123
bigBed narrowPeak
80
zippedFastqFolder
68
bed broadPeak
55
bed bed3+
55
bigBed broadPeak
22
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
3
cool
2
hdf5
1
tar
1
txt
Organism
55
Homo sapiens
Biosample type
33
tissue
22
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
55
AMP
Genome assembly (visualization)
52
GRCh38
49
hg19
Lab
55
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
55 results
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DNase-seq
ChIP-seq
Hi-C
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
forelimb muscle
1
hindlimb muscle
1
skeletal muscle tissue
1
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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