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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
16
DNase-seq
6
WGBS
3
ChIP-seq
2
Hi-C
1
ATAC-seq
1
RNA microarray
Assay category
148
Transcription
17
DNA accessibility
6
DNA methylation
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
33
April, 2018
33
July, 2018
32
February, 2021
26
September, 2018
14
June, 2019
7
July, 2019
6
December, 2019
6
May, 2021
5
October, 2019
3
August, 2018
3
August, 2021
3
March, 2020
2
February, 2023
2
October, 2018
1
June, 2018
1
November, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
177
Homo sapiens
Biosample type
137
primary cell
35
cell line
3
tissue
2
in vitro differentiated cells
Organ
505
connective tissue
446
pancreas
407
adipose tissue
198
heart
187
liver
177
epithelium
102
kidney
81
vasculature
79
blood vessel
62
artery
61
brain
58
bone element
43
limb
43
musculature of body
18
ureter
17
embryo
9
eye
7
nerve
2
intestine
2
spleen
2
vein
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
169
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
165
GRCh38
162
hg19
Lab
171
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
ChIP-seq
Hi-C
ATAC-seq
RNA microarray
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
2
renal glomerulus
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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