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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
50
DNA binding
5
DNA accessibility
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
1
October, 2019
Available data
2696
bam
2476
bigWig
1449
bed narrowPeak
1330
tsv
862
fastq
860
bigBed narrowPeak
298
tagAlign
264
bed broadPeak
227
bed bed3+
bigBed broadPeak
161
txt
64
xls
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
59
Homo sapiens
Biosample type
29
tissue
25
in vitro differentiated cells
primary cell
3
stem cell
2
cell line
Organ
22
pancreas
17
connective tissue
4
adipose tissue
4
liver
3
embryo
1
musculature of body
Project
59
AMP
Genome assembly (visualization)
59
hg19
51
GRCh38
Lab
57
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
files.file_type!
bigBed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
skeletal muscle tissue
1
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
stem cell
hESC
3
cell line
HepG2
1
Panc1
1
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