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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
DNase-seq
3
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
5
DNA accessibility
3
DNA binding
1
3D chromatin structure
Target of assay
2
transcription factor
1
control
Date released
3
August, 2017
3
November, 2018
2
June, 2019
1
February, 2021
1
July, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
10
Homo sapiens
Biosample type
6
tissue
3
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
liver
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
10
AMP
Genome assembly (visualization)
10
hg19
8
GRCh38
Lab
10
AMP-T2D consortium
organ_slims!
adipose tissue
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
10 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
2
3
right lobe of liver
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
hepatocyte
1
cell line
HepG2
1
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