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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
6
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
9
DNA accessibility
6
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
6
June, 2019
3
August, 2017
3
August, 2021
3
November, 2018
1
February, 2021
1
July, 2019
Available data
688
bam
628
bigWig
474
bed narrowPeak
465
fastq
364
bigBed narrowPeak
179
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
17
Homo sapiens
Biosample type
9
tissue
7
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
17
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
17
AMP-T2D consortium
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
17 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
2
3
retina
3
right lobe of liver
1
primary cell
hepatocyte
1
3
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
retinal pigment epithelial cell
1
cell line
HepG2
1
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