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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
4
ATAC-seq
2
Capture-C
Assay category
16
DNA binding
4
DNA accessibility
Target of assay
6
histone
6
histone modification
6
transcription factor
4
control
3
broad histone mark
3
narrow histone mark
Date released
9
December, 2017
7
August, 2017
4
February, 2023
2
August, 2021
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
205
tissue
37
primary cell
22
in vitro differentiated cells
3
cell line
3
stem cell
Organ
13
connective tissue
embryo
Project
22
AMP
Genome assembly (visualization)
22
hg19
16
GRCh38
Lab
20
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
7
inconsistent control read length
organ_slims!
embryo
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
ATAC-seq
Capture-C
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
primitive gut cell
3
immature adipocyte
2
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