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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
38
ChIP-seq
1
Hi-C
Assay category
174
DNA accessibility
38
DNA binding
1
3D chromatin structure
Target of assay
19
transcription factor
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
4
control
2
RNA binding protein
Date released
157
June, 2019
33
August, 2017
December, 2017
9
November, 2018
8
October, 2019
3
August, 2021
2
September, 2017
1
November, 2020
Available data
2691
bam
2635
bigWig
1370
bed narrowPeak
1330
tsv
874
fastq
854
bigBed narrowPeak
252
bed broadPeak
242
tagAlign
237
bigBed broadPeak
213
bed bed3+
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
213
Homo sapiens
Biosample type
177
tissue
27
primary cell
7
in vitro differentiated cells
2
cell line
Organ
78
kidney
36
limb
33
musculature of body
32
brain
heart
29
pancreas
19
connective tissue
19
epithelium
18
ureter
11
liver
11
vasculature
9
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
213
AMP
Genome assembly (visualization)
213
GRCh38
208
hg19
Lab
213
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
month_released!
December, 2017
BIOSAMPLE
ASSAY
213 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
hepatocyte
1
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 16 more…
in vitro differentiated cells
adipocyte
7
cell line
Panc1
1
1
See all biosamples
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