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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
32
ChIP-seq
4
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
Target of assay
13
histone
13
histone modification
12
transcription factor
7
control
7
narrow histone mark
6
broad histone mark
Date released
15
December, 2017
14
August, 2017
3
August, 2021
Available data
1380
bam
1189
bigWig
1145
bed narrowPeak
742
bigBed narrowPeak
710
fastq
379
tagAlign
102
bed broadPeak
79
bigBed broadPeak
32
bed bed3+
3
tar
1
tagAlign bed3+
Organism
32
Homo sapiens
Biosample type
19
in vitro differentiated cells
7
tissue
3
primary cell
3
stem cell
Organ
pancreas
11
connective tissue
6
liver
4
adipose tissue
3
embryo
3
epithelium
Project
32
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
32
AMP-T2D consortium
Audit category:
4
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
tissue
white adipose tissue
4
liver
3
primary cell
hepatocyte
3
stem cell
hESC
3
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