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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
3
Hi-C
Assay category
198
DNA accessibility
53
DNA binding
3
3D chromatin structure
2
Transcription
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
3
August, 2021
2
July, 2019
2
September, 2017
1
October, 2019
Available data
1476
bam
1314
bigWig
1250
bed narrowPeak
852
fastq
730
bigBed narrowPeak
392
tagAlign
108
bed broadPeak
73
bigBed broadPeak
56
bed bed3+
20
hic
18
bedpe bed3+
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
Organism
56
Homo sapiens
Biosample type
28
tissue
19
in vitro differentiated cells
5
primary cell
3
stem cell
1
cell line
Organ
22
pancreas
12
connective tissue
7
liver
5
epithelium
4
adipose tissue
3
brain
3
embryo
2
blood vessel
vasculature
Project
56
AMP
Genome assembly (visualization)
56
hg19
54
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
primary cell
hepatocyte
3
astrocyte of the cerebellum
1
brain pericyte
1
stem cell
hESC
3
cell line
Panc1
1
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