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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
6
ChIP-seq
Assay category
11
DNA accessibility
6
DNA binding
Target of assay
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
1
control
Date released
11
June, 2019
3
August, 2021
3
December, 2017
Available data
319
bam
301
bigWig
274
fastq
169
tsv
143
bed narrowPeak
80
zippedFastqFolder
56
bigBed narrowPeak
17
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
7
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
cool
Organism
17
Homo sapiens
Biosample type
14
primary cell
3
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
17
AMP
Genome assembly (visualization)
17
GRCh38
12
hg19
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
vasculature
BIOSAMPLE
ASSAY
17 results
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DNase-seq
ChIP-seq
primary cell
hepatocyte
1
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
+ See 4 more…
in vitro differentiated cells
pancreatic endoderm
3
See all biosamples
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