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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
DNase-seq
4
Hi-C
3
ChIP-seq
Assay category
44
DNA accessibility
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
42
June, 2019
4
July, 2019
3
August, 2021
2
October, 2019
Available data
552
bam
514
bigWig
348
bed narrowPeak
fastq
197
bigBed narrowPeak
182
tsv
125
tagAlign
80
zippedFastqFolder
63
bed broadPeak
54
bigBed broadPeak
53
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
5
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
51
Homo sapiens
Biosample type
26
primary cell
25
tissue
Organ
78
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
epithelium
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
7
liver
6
pancreas
4
artery
4
eye
2
nerve
2
vein
1
adipose tissue
Project
51
AMP
Genome assembly (visualization)
47
GRCh38
35
hg19
Lab
51
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
51 results
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DNase-seq
Hi-C
ChIP-seq
primary cell
hepatocyte
1
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
endothelial cell of umbilical vein
2
+ See 12 more…
tissue
brain
12
frontal cortex
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 8 more…
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