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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
18
ChIP-seq
3
Hi-C
1
ATAC-seq
Assay category
33
DNA accessibility
18
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
5
control
4
narrow histone mark
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
10
October, 2017
9
November, 2017
3
July, 2019
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
54
Homo sapiens
Biosample type
37
tissue
17
primary cell
Organ
477
pancreas
472
liver
278
epithelium
116
connective tissue
78
kidney
60
blood
60
bodily fluid
54
brain
45
adipose tissue
36
limb
36
musculature of body
30
heart
27
embryo
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
2
nerve
2
vein
Project
54
AMP
Genome assembly (visualization)
45
GRCh38
40
hg19
Lab
54
AMP-T2D consortium
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
54 results
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DNase-seq
ChIP-seq
Hi-C
ATAC-seq
tissue
brain
14
9
cerebellum (Hemisphere)
1
1
frontal cortex
2
Ammon's horn
1
caudate nucleus
1
+ See 8 more…
primary cell
astrocyte of the cerebellum
1
3
1
brain microvascular endothelial cell
1
3
1
choroid plexus epithelial cell
1
3
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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