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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
DNase-seq
4
Hi-C
3
ChIP-seq
1
pCHi-C
Assay category
37
DNA accessibility
4
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
32
June, 2019
5
November, 2018
4
July, 2019
August, 2017
3
August, 2021
1
February, 2021
Available data
898
bam
826
bigWig
626
bed narrowPeak
479
bigBed narrowPeak
458
fastq
200
tsv
184
tagAlign
110
bed broadPeak
101
bigBed broadPeak
45
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
45
Homo sapiens
Biosample type
30
tissue
14
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
21
epithelium
18
ureter
16
connective tissue
13
vasculature
11
blood vessel
10
liver
10
pancreas
4
artery
4
eye
3
embryo
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
45
AMP
Genome assembly (visualization)
40
GRCh38
35
hg19
Lab
45
AMP-T2D consortium
month_released!
August, 2017
BIOSAMPLE
ASSAY
45 results
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DNase-seq
Hi-C
ChIP-seq
pCHi-C
tissue
brain
14
frontal cortex
2
liver
2
Ammon's horn
1
caudate nucleus
1
+ See 10 more…
primary cell
hepatocyte
1
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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