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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
DNase-seq
6
ChIP-seq
4
Hi-C
1
pCHi-C
Assay category
41
DNA accessibility
6
DNA binding
4
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
34
June, 2019
5
November, 2018
4
July, 2019
3
August, 2017
3
August, 2021
2
October, 2019
1
February, 2021
Available data
1026
bam
929
bigWig
718
bed narrowPeak
510
bigBed narrowPeak
486
fastq
258
tsv
210
tagAlign
114
bed broadPeak
105
bigBed broadPeak
52
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
52
Homo sapiens
Biosample type
37
tissue
14
primary cell
1
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
52
AMP
Genome assembly (visualization)
47
GRCh38
42
hg19
Lab
52
AMP-T2D consortium
BIOSAMPLE
ASSAY
52 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
brain
14
liver
2
3
coronary artery
2
frontal cortex
2
tibial artery
2
+ See 12 more…
primary cell
hepatocyte
1
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
+ See 3 more…
cell line
HepG2
1
See all biosamples
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